Impact of prefractionation using Gradiflow on two-dimensional gel electrophoresis and protein identification by matrix assisted laser desorption/ionization-time of flight-mass spectrometry

Prefractionation of protein samples prior to two-dimensional electrophoresis (2-DE) has the potential to increase the dynamic detection range for proteomic analysis. We evaluated a membrane-based electrophoretic separation technique (Gradiflow) for its ability to fractionate an exoproteome sample from the filamentous fungus Trichoderma reesei. The sample was separated on the basis of size and charge. Buffer optimization was found to be necessary for successful size fractionation. Fractionation by charge was used to resolve the sample into four fractions that were subjected to analysis by two-dimensional electrophoresis (2-DE). Enhanced detection of low-abundance proteins with selective removal of high-abundance species was achieved. Fractionated and unfractionated samples were examined for differences in the ability to identify proteins following 2-DE using trypsin in-gel digestion followed by peptide mass fingerprinting using matrix assisted laser desorption/ionization-time of flight-mass spectrometry (MALDI-TOF-MS). Fractionated samples showed marked improvement in protein identification ability and sequence coverage. This study demonstrates the utility of the Gradiflow for fractionation, resulting in an enhancement of resolution and characterization of a moderately complex proteome.     

Determination of alcohol polyether average molar oligomer value/distribution via supercritical fluid chromatography coupled with UV and MS detection

Supercritical fluid chromatography (SFC) was used for the analysis of ethoxylated and propoxylated surfactants. Samples were derivatized to phenylated silyl ethers with a disilazane-chlorosilane mixture. Addition of a phenyl group to the surfactant allowed UV-absorbance detection of each oligomer. Acetonitrile and methanol were evaluated as mobile phase modifiers. Better peak shape was realized with methanol-modified CO2 on an octadecyl silica bonded phase than with acetonitrile-modified CO2. Peak assignments were made via SFC coupled with electrospray ionization-mass spectrometry (ESI-MS) in the positive ion mode. A sulfonamide-embedded alkyl stationary phase was also evaluated for separation of the derivatized samples. SFC-UV and SFC-ESI-MS data were jointly used for calculation of average molar oligomer values which were then compared to values calculated from 1H NMR data of non-derivatized samples. The derivatization or separation method using the sulfonamide embedded phase required no preliminary cleanup and yielded reproducible oligomer values that were consistent with those of the manufacturer's nominal values.     

Functionalized pyridylboronic acids and their Suzuki cross-coupling reactions to yield novel heteroarylpyridines

2-Bromo-5-pyridylboronic acid 2a, 2-chloro-5-pyridylboronic acid 2b, 2-methoxy-5-pyridylboronic acid 2c, and 5-chloro-2-methoxy-4-pyridylboronic acid 4 have been synthesized and shown to undergo palladium-catalyzed cross-coupling reactions with heteroaryl bromides to yield novel heteroarylpyridine derivatives. The X-ray crystal structures of 2a and 2b have been obtained.     

High-resolution spectroscopy of induced chiral dimers: a study of the dimers of ethanol by Fourier transform microwave spectroscopy

We present the first recording of the high-resolution spectrum of an induced chiral dimer. Three conformers of the induced chiral dimers of ethanol have been observed using a pulsed molecular-beam Fourier transform microwave spectrometer. The rotational constants of the normal isotopomers of the three species have been determined to be (a) A=5113.826(5), B=1329.7214(4), and C=1257.5151(3) MHz, (b) A=5086.459(5), B=1316.6508(4), and C=1243.6329(4) MHz, and (c) A=4851.608(5), B=1369.7558(6), and C=1243.4184(4) MHz. The observed species have been assigned to calculated structures via Kraitchman double substitution analyses and ab initio calculations. The Kraitchman analyses and the fitted centrifugal distortion parameters suggest that the deuterium bond is significantly stronger than the hydrogen bond in the dimers of ethanol.     

Templated ceramic microstructures by using the breath-figure method

We describe the synthesis of two cyclobutadiene(cyclopentadienyl)cobalt-containing poly(p-phenylene ethynylene)s (PPEs) and their use as precursors for stable ceramic surface coatings. Organometallic PPEs were shaped into hexagonally ordered assemblies by using the breath-figure method. Such breath figures can be washed away with an appropriate solvent. Upon pyrolysis at 500 degrees C under either nitrogen or air, the bubble arrays persist as ceramics and are insoluble in organic solvents or water. The formed pyrolyzed bubble arrays were analyzed by optical and scanning electron microscopy, as well as energy dispersive X-ray microanalysis (EDX). The composition of the ceramic materials is discussed based on EDX and IR data.     

Conduction in charged PbSe nanocrystal films

Conduction in thin films of PbSe nanocrystals doped by electrochemical gating has been studied. Charging the film, with either electrons or holes, increases the conductance by orders of magnitude. The electrons in the 1S(e) state of nanocrystals in these films have a mobility as high as 5.0 x 10(-3) cm(2) V(-1) s(-1). Electrons in the 1P(e) state were found to have a differential mobility up to 3-5 times greater than the electrons in the 1S(e) state, and a mobility minima was found corresponding to the complete filling of the 1S(e) state. The temperature and electric field dependence of conductance in the film, measured between 4.3 and 135 K, were both well described by a variable range hopping model.     

Synthesis of mixed metal decaosmium carbido clusters: The X-ray structures of the monoanions [Os10C(CO)24Cu(NCMe)]− and [Os10C(CO)24AuPPh3]−

The high nuclearity mixed metal cluster monoanions [Os₁₀C(CO)₂₄Cu(NCMe)]^? (I) and [Os₁₀C(CO)₂₄AuPPh₃]^? (II) have been obtained by reaction of the carbido-dianion [Os₁₀C(CO)₂₄]^2? (III) with one equivalent of [Cu(NCMe)₄] [BF₄] and Ph₃PAuCl, respectively, in CH₂Cl₂. X-ray analysis of the [PPh₃Me]⁺ salts of I and II show that the Cu and Au ligands have added to capping tetrahedra of the dianion III in μ₃- and μ₂-bridging positions, respectively.     

Thermal degradation and oxidation of polystyrene studied by factor-jump thermogravimetry

Factor-jump thermogravimetry has been used to study the activation energy of polystyrene degrading in a vacuum, in N₂ flowing at 4 mm/s and in $\text{N}{}_2\text{O}{}_2$ mixtures. The results show the activation energy to be 44·9 ± 0·2 kcal/mole (188 ± 0·8 kJ/mole) for degradation above 350°C in vacuum or in flowing N₂. This agrees well with work reported in 1949 by Jellinek⁷ but with few results reported subsequently.The apparent activation energy for polystyrene losing weight above 280°C in an atmosphere of abundant O₂ is 21·5 ± 0·2 kcal/mole (90·2 ± 0·8 kJ/mole). In all cases where O₂ was deliberately introduced (partial pressures >4 mm Hg), the sample degraded to a black tar and the activation energy was ≤30 kcal/mole, depending on the amount of oxygen present and on the thermal history of the sample.     

Metallocycle synthesis accelerated by high pressure

Reaction of cis-[FeH₂(dmpe)₂](1) with diphenylbutadiyne results in an insertion into both of the iron-hydride bonds to form an iron metallocycle. Spectroscopic and crystallographic data of [Fe(PhHCC₂CHPh)(dmpe)₂] (3) show 1,4-diphenylbutatriene is symmetrically bound to the metal via the central double bond. The reaction to form the metallocyclic complex is greatly accelerated by application of external pressure. A 41% yield of (3) is isolated after two days at atmospheric pressure or after approximately 75 min at 800MPa.